Softwares

physion

We develop physion: an integrated software for the acquisition, the pre-processing, the standardisation, the analysis and the sharing of neurophysiological data in the context of visual processing in behaving mice.

See the documentation at: github.com/yzerlaut/physion

fairgraph

We contributed to fairgraph, a high-level python API for the Ebrains knowledge graph (KG). The Ebrains KG is a metadata management system allowing the sharing and re-use of neuroscientific data.

See the documentation at: https://fairgraph.readthedocs.io

Data Science package suite

We combined the tools we use in my data science workflow in the following suite of python packages: (1) analyz. A package for data analysis: a high-level layer on top of numpy and scipy.
(2) datavyz. A package for data visualization: a high-level layer on top of matplotlib.
(3) finalyz. A package for results dissemination. It allows to build reports, articles and presentations from simple markdown scripts. It is mostly a high-level layer on top of LaTeX.